Questions tagged [pset6-dna]
The pset6-dna tag has no usage guidance.
21
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DNA Week 6 | Issues
I have been working on this DNA problem for a while now, and I do not understand what causes the many problems. Right now there are just some technical problems, for example saying "No match"...
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My code look correct and work correctly for all other sequence but check50 says sequence/18 is wrong, expected "No match" not harry
import csv
import sys
global y
def main():
y = 0
x = 0
t = 0
# Check for command-line usage
if len(sys.argv) != 3:
sys.exit("Usage: python dna.py data.csv sequence....
- 3
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23
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PSET6 DNA storing STR subsequences in a dictionary
I am working on one of the TODOs where the longest match of each short tandem repeat (STR) needs to be found from the DNA sequence read—written as just "sequence" in this code. To check ...
- 5
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PSET 6 - DNA - Checking the equality of STRs
This is my loop to check the equality of STR counts, csv list is a list storing data of the csv file and STRlist is a list storing all the STRs. It prints the wrong name, I guess it has something to ...
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1
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PSET6: DNA check50 expecting no match on txt18 ,but my program returns harry
my code works for all the other tests on check50 besides the one for txt18. I checked the Large.csv file and the return value of longest_match function (both provided by cs50) and they match up yet ...
- 11
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cs50 dna pset6 2022. My code works on small database but not on large database
This is my solution to CS50 pset6 DNA problem in python. It works fine on small database but gives this traceback and error:
File "E:\CS50x\pset6-dna\dna.py", line 35, in main
STR_match[...
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1
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CS50 PSET6 DNA problem. Need advices to make my code more pythonic
I need some advises how i can improve my code and make it more pythonic. Cause i feel like my code is too long.
This is my solution to cs50 DNA problem:
import sys
import csv
if len(sys.argv) != 3:
...
- 21
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What does "consecutively" mean in pset6 DNA?
I am working on pset6 DNA and I'm not sure I understand the terms of the problem.
The objective is to write a program that matches a DNA sequence to a person in a DNA database based on the largest ...
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1
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61
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Pset6 DNA. How to use a list in re.findall?
In pset6 DNA I'm using re.findall to find the nucleotides sequences but I'm only hardcoding the keys like this:
re.findall(r'(?:TATC)+', sequence)
So it's not working in the "large" database ...
- 123
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100
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DNA Max Sequence Bug | Working on small.csv but not on large.csv
This is the complete code:
"""
- open csv file and sequence , read contents
- for each str, compute longest chain
- compare str counts aganist ech row in csv file
"""...
1
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1
answer
63
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DNA: Excluding a column from my dict iteration
Logic: I'm trying to do this in such a way that I check the database first, then I check the DNA sequence to see if that information corresponds to any of the information in my database.
I want to ...
- 23
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109
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Pset 6 - Dna - My outputs are slightly incorrect. Could someone help me figure out what might be the problem here?
I've been stuck on this question for a week. After countless hours of debugs, I decided to post it here. Please refer to images and code snippets below and kindly explain to me what might be the ...
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172
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Minor change in pset6/dna required, need some help or hint
I am really really close to completing pset/dna.
But there seems to be some problem in the 'if statement'. Somebody please guide.
Before the line of underscores in the terminal, I have printed the ...
- 11
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75
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PSET6 DNA Think I'm getting an infinite loop which is apparent when testing with every txt file after 4.txt
Hi all I'm having trouble for PSET6 DNA. My code works fine for everything up until and including 4.txt but whenever I go to check the large.csv file and thus 5.txt, 6.txt, 7.txt and so on I seem to ...
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124
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pset6 - DNA - works for small.csv but not large.csv
import csv
import sys
with open(sys.argv[1], 'r') as file:
# stores data from small.csv in both dict and list form
dna_names_dict = csv.DictReader(file)
...
- 5
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24
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Index to integer
How do i convert an index to an integer?
I tried int(index), that didnt work.
For example;
S = [a,b,c,d]
For index in S:
n = int(index)
print (n)
break
print ()
- 15
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109
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check50 gives different output than my own for "18.txt" sequence. All others pass. Any thoughts/suggestions are appreciated
from sys import argv
import csv
import re
# Only run if argc is 3
if len(argv) == 3:
STRs = ["AGATC", "TTTTTTCT", "TCTAG", "GATA", "TATC", "...
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174
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PSET 6 DNA - Computing STRs
I am trying to compute the most repeated STR for each sequence in a dictionary called str_dict.
# compute STRs
i = 0
# stablish length of the sequence
length_seq = len(sequence)
# iterate through all ...
- 15
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3
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133
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Program for dna not printing anything
I have written a program for DNA, but it's not printing anything. Code:
import csv
from sys import *
if len(argv) != 2:
print("Usage: python dna.py data.csv sequence.txt")
def maxcount(...
user31128
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1
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99
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Computing consecutive STR is sometimes off by a little (Spoiler!)
My code works fine for the small csv file; however, when I get to the big csv file, my counts for the number of consecutive STR are less than the actual value by about 1 or 2.
Here is my code:
import ...
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163
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pset6 count STR in the DNA sequence issues
so i m a bit confused...i have been testing my code using the small database and what i have so far produced what i expected ....
more specifically the STRcounts (i marked that part #?????). it is ...
- 109